Tami Marrone: search on Z-Library

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1

STRUCTURE-BASED DRUG DESIGN:Computational Advances

Marrone, Tami J., Briggs, and, James M., McCammon, J. Andrew

Journal:

Annual Review of Pharmacology

Year:

1997

Language:

english

File:

PDF, 149 KB

english, 1997

2

Predictors of response to cognitive behavioral treatment for bulimia nervosa delivered via telemedicine versus face-to-face

Sonia Marrone, James E. Mitchell, Ross Crosby, Steve Wonderlich, Tami Jollie-Trottier

Journal:

Journal of Eating Disorders

Year:

2009

Language:

english

File:

PDF, 70 KB

english, 2009

3

Design and Synthesis of Novel and Selective Phosphodiesterase 2 (PDE2a) Inhibitors for the Treatment of Memory Disorders

Gomez, Laurent, Massari, Mark Eben, Vickers, Troy, Freestone, Graeme, Vernier, William, Ly, Kiev, Xu, Rui, McCarrick, Margaret, Marrone, Tami, Metz, Markus, Yan, Yingzhou G., Yoder, Zachary W., Lemus,

Journal:

Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

4

Computational Science New Horizons and Relevance to Pharmaceutical Design

James M Briggs, Tami J Marrone, J.Andrew McCammon

Journal:

Trends in Cardiovascular Medicine

Year:

1996

Language:

english

File:

PDF, 1.72 MB

english, 1996

5

Hierarchy of simulation models in predicting molecular recognition mechanisms from the binding energy landscapes: Structural analysis of the peptide complexes with SH2 domains

Gennady M. Verkhivker, Djamal Bouzida, Daniel K. Gehlhaar, Paul A. Rejto, Lana Schaffer, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Veda Larson, Brock A. Luty, Tami Marrone, Peter W. Rose

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 1.29 MB

english, 2001

6

Transferability of ion models

Marrone, Tami J., Merz, Kenneth M.

Journal:

Journal of Physical Chemistry

Year:

1993

Language:

english

File:

PDF, 663 KB

english, 1993

7

Conformational sampling with Poisson-Boltzmann forces and a stochastic dynamics/Monte Carlo method: Application to alanine dipeptide

Smart, Jason L., Marrone, Tami J., McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Year:

1997

Language:

english

File:

PDF, 441 KB

english, 1997

8

Discovering high-affinity ligands from the computationally predicted structures and affinities of small molecules bound to a target: A virtual screening approach

Tami J. Marrone, Brock A. Luty, Peter W. Rose

Journal:

Perspectives in Drug Discovery and Design

Year:

2000

Language:

english

File:

PDF, 148 KB

english, 2000

9

Parallel simulated tempering dynamics of ligand–protein binding with ensembles of protein conformations

Gennady M. Verkhivker, Paul A. Rejto, Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Tami Marrone, Peter W. Rose

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 351 KB

english, 2001

10

Characterizing the Effects of the Juxtamembrane Domain on Vascular Endothelial Growth Factor Receptor-2 Enzymatic Activity, Autophosphorylation, and Inhibition by Axitinib

Solowiej, James, Bergqvist, Simon, McTigue, Michele A., Marrone, Tami, Quenzer, Terri, Cobbs, Morena, Ryan, Kevin, Kania, Robert S., Diehl, Wade, Murray, Brion W.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

11

Reply to Comment on "Transferability of Ion Models"

Marrone, Tami J., Merz, Kenneth M.

Journal:

Journal of Physical Chemistry

Year:

1994

Language:

english

File:

PDF, 267 KB

english, 1994

12

Deciphering common failures in molecular docking of ligand-protein complexes

Gennady M. Verkhivker, Djamal Bouzida, Daniel K. Gehlhaar, Paul A. Rejto, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Veda Larson, Brock A. Luty, Tami Marrone, Peter W. Rose

Journal:

Journal of Computer-Aided Molecular Design

Year:

2000

Language:

english

File:

PDF, 405 KB

english, 2000

13

Enzyme-Inhibitor Association Thermodynamics

Resat, Haluk, Marrone, Tami J., McCammon, J.Andrew

Journal:

Biophysical Journal

Year:

1997

Language:

english

File:

PDF, 1.35 MB

english, 1997

14

Molecular recognition of potassium ion by the naturally occurring antibiotic ionophore nonactin

Marrone, Tami J., Merz, Kenneth M.

Journal:

Journal of the American Chemical Society

Year:

1992

Language:

english

File:

PDF, 918 KB

english, 1992

15

Theoretical Study of Inhibition of Adenosine Deaminase by (8 R )-Coformycin and (8 R )-Deoxycoformycin

Marrone, Tami J., Straatsma, T. P., Briggs, James M., Wilson, David K., Quiocho, Florante A., McCammon, J. Andrew

Journal:

Journal of Medicinal Chemistry

Year:

1996

Language:

english

File:

PDF, 274 KB

english, 1996

16

Hierarchy of Simulation Models in Predicting Structure and Energetics of the Src SH2 Domain Binding to Tyrosyl Phosphopeptides

Verkhivker, Gennady M., Bouzida, Djamal, Gehlhaar, Daniel K., Rejto, Paul A., Schaffer, Lana, Arthurs, Sandra, Colson, Anthony B., Freer, Stephan T., Larson, Veda, Luty, Brock A., Marrone, Tami, Rose,

Journal:

Journal of Medicinal Chemistry

Year:

2002

Language:

english

File:

PDF, 553 KB

english, 2002

17

Comparison of Continuum and Explicit Models of Solvation: Potentials of Mean Force for Alanine Dipeptide

Marrone, Tami J., Gilson, Michael K., McCammon, J. Andrew

Journal:

Journal of Physical Chemistry

Year:

1996

Language:

english

File:

PDF, 280 KB

english, 1996

18

Solvation studies of DMP323 and A76928 bound to HIV protease: Analysis of water sites using grand canonical Monte Carlo simulations

Tami J. Marrone, J. Andrew McCammon, Haluk Resat, C. Nicholas Hodge, Chong-Hwan Chang

Journal:

Protein Science

Year:

1998

Language:

english

File:

PDF, 5.12 MB

english, 1998

19

Pepzyme Dynamics and Conformation: A Molecular Dynamics Study in Water

Marrone, Tami J., McCammon, J. Andrew

Journal:

Journal of the American Chemical Society

Year:

1994

Language:

english

File:

PDF, 233 KB

english, 1994

20

Mathematical and Structural Characterization of Strong Non-additive SAR Caused by Protein Conformational Changes

Gomez, Laurent, Xu, Rui, Sinko, William, Selfridge, Brandon, Vernier, William Francois, Ly, Kiev, Truong, Richard, Metz, MArkus, Marrone, Tami, Sebring, Kristen, Yan, Yingzhuo, appleton, brent, Aertge

Journal:

Journal of Medicinal Chemistry

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

21

Determination of Atomic Charges Including solvation and Conformational Effects

Marrone, Tami J., Hartsough, David S., Merz, Kenneth M.

Journal:

Journal of Physical Chemistry

Year:

1994

Language:

english

File:

PDF, 324 KB

english, 1994

22

Discovery of Selective Phosphodiesterase 1 Inhibitors with Memory Enhancing Properties

Dyck, Brian, Branstetter, Bryan, Gharbaoui, Tawfik, Hudson, Andrew R., Breitenbucher, J. Guy, Gomez, Laurent, Botrous, Iriny, Marrone, Tami, Barido, Richard, Allerston, Charles K., Cedervall, E. Peder

Journal:

Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 3.42 MB

english, 2017

23

Absolute Configuration of Bromochlorofluoromethane from Molecular Dynamics Simulation of Its Enantioselective Complexation by Cryptophane-C

Costante-Crassous, Jeanne, Marrone, Tami J., Briggs, James M., McCammon, J. Andrew, Collet, André

Journal:

Journal of the American Chemical Society

Year:

1997

Language:

english

File:

PDF, 276 KB

english, 1997

24

Towards understanding the mechanisms of molecular recognition by computer simulations of ligand–protein interactions

Gennady M. Verkhivker, Paul A. Rejto, Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Tami Marrone, Peter W. Rose

Journal:

Journal of Molecular Recognition

Year:

1999

Language:

english

File:

PDF, 1.14 MB

english, 1999

25

Molecular Recognition of K+ and Na+ by Valinomycin in Methanol

Marrone, Tami J., Merz, Kenneth M. Jr.

Journal:

Journal of the American Chemical Society

Year:

1995

Language:

english

File:

PDF, 1.34 MB

english, 1995

26

Navigating ligand–protein binding free energy landscapes: universality and diversity of protein folding and molecular recognition mechanisms

Gennady M. Verkhivker, Paul A. Rejto, Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Tami Marrone, Peter W. Rose

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 243 KB

english, 2001

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